Examples

Getting Started and IO

This Notebook tests whether your cedalion installation is working

Xarray Data Structures - an fNIRS example

The Recording Container: Cedalion’s main data structure and a guide to indexing

Data Structures and I/O

Storing estimated HRFs in snirf files

Signal Quality

Calculating the Scalp Coupling Index

Channel Quality Assessment and Pruning

Motion Artefact Detection and Correction (WIP / in validation)

Modeling

GLM Basis Functions

GLM Fingertapping Example

GLM Illustrative Example

Head Models and Image Reconstruction

Image Reconstruction

Photogrammetric Optode Coregistration

Constructing 10-10 coordinates on segmented MRI scans

Head Models and Coordinate Reference Systems (CRS)

Machine Learning and Data Driven Methods

Basic single trial fNIRS finger tapping classification

Data Augmentation

Plots & Visualization

Visualization Examples using Cedalion Plot Functions