cedalion

• cedalion package
  • Subpackages
    • cedalion.data package
      • Module contents
    • cedalion.dataclasses package
      • Submodules
      • cedalion.dataclasses.accessors module
      • cedalion.dataclasses.geometry module
      • cedalion.dataclasses.recording module
      • cedalion.dataclasses.schemas module
      • Module contents
    • cedalion.geometry package
      • Subpackages
      • Submodules
      • cedalion.geometry.landmarks module
      • cedalion.geometry.registration module
      • cedalion.geometry.segmentation module
      • cedalion.geometry.utils module
      • Module contents
    • cedalion.imagereco package
      • Submodules
      • cedalion.imagereco.forward_model module
      • cedalion.imagereco.solver module
      • cedalion.imagereco.tissue_properties module
      • cedalion.imagereco.utils module
      • Module contents
    • cedalion.io package
      • Submodules
      • cedalion.io.anatomy module
      • cedalion.io.bids module
      • cedalion.io.forward_model module
      • cedalion.io.nirs module
      • cedalion.io.photogrammetry module
      • cedalion.io.probe_geometry module
      • cedalion.io.snirf module
      • Module contents
    • cedalion.models package
      • Subpackages
      • Module contents
    • cedalion.sigdecomp package
      • Submodules
      • cedalion.sigdecomp.ERBM module
      • cedalion.sigdecomp.ICA_EBM module
      • cedalion.sigdecomp.dummy module
      • Module contents
    • cedalion.sigproc package
      • Submodules
      • cedalion.sigproc.epochs module
      • cedalion.sigproc.frequency module
      • cedalion.sigproc.motion_correct module
      • cedalion.sigproc.quality module
      • cedalion.sigproc.tasks module
      • Module contents
    • cedalion.sim package
      • Submodules
      • cedalion.sim.synthetic_artifact module
      • cedalion.sim.synthetic_hrf module
      • cedalion.sim.synthetic_utils module
      • Module contents
    • cedalion.vis package
      • Submodules
      • cedalion.vis.plot_probe module
      • cedalion.vis.plot_sensitivity_matrix module
      • cedalion.vis.time_series module
      • Module contents
  • Submodules
  • cedalion.datasets module
    • get_ninja_cap_probe()
    • get_ninja_uhd_cap_probe()
    • get_snirf_test_data()
    • get_colin27_segmentation()
    • get_colin27_headmodel()
    • get_icbm152_segmentation()
    • get_fingertapping()
    • get_fingertappingDOT()
    • get_fingertapping_snirf_path()
    • get_multisubject_fingertapping_snirf_paths()
    • get_multisubject_fingertapping_path()
    • get_photogrammetry_example_scan()
    • get_imagereco_example_fluence()
    • get_precomputed_fluence()
    • get_ninjanirs_colin27_precomputed_fluence()
    • get_ninjanirs_colin27_precomputed_sensitivity()
    • get_nn22_resting_state()
  • cedalion.errors module
    • CRSMismatchError
      • CRSMismatchError.unexpected_crs()
      • CRSMismatchError.wrong_transform()
  • cedalion.nirs module
    • get_extinction_coefficients()
    • channel_distances()
    • int2od()
    • od2conc()
    • conc2od()
    • beer_lambert()
    • split_long_short_channels()
  • cedalion.physunits module
  • cedalion.plots module
    • plot_montage3D()
    • plot3d()
    • plot_surface()
    • plot_labeled_points()
    • plot_vector_field()
    • OptodeSelector
      • OptodeSelector.surface
      • OptodeSelector.points
      • OptodeSelector.normals
      • OptodeSelector.plotter
      • OptodeSelector.labels
      • OptodeSelector.actors
      • OptodeSelector.color
      • OptodeSelector.plot()
      • OptodeSelector.on_pick()
      • OptodeSelector.update_visualization()
      • OptodeSelector.enable_picking()
      • OptodeSelector.plot()
      • OptodeSelector.on_pick()
      • OptodeSelector.update_visualization()
      • OptodeSelector.enable_picking()
      • OptodeSelector.find_surface_normal()
      • OptodeSelector.update_normals()
    • plot_stim_markers()
    • scalp_plot()
  • cedalion.tasks module
    • task()
  • cedalion.typing module
    • LabeledPointCloud
    • NDTimeSeries
    • AffineTransform
    • QTime
    • QLength
    • QFrequency
  • cedalion.utils module
    • zero_padded_numbers()
  • cedalion.validators module
    • has_time()
    • has_wavelengths()
    • has_channel()
    • has_positions()
    • is_quantified()
    • check_dimensionality()
  • cedalion.vtktutils module
    • trimesh_to_vtk_polydata()
    • pyvista_polydata_to_trimesh()
  • cedalion.xrutils module
    • pinv()
    • norm()
    • mask()
    • apply_mask()
    • convolve()
    • other_dim()
    • coords_from_other()
    • unit_stripping_is_error()
  • Module contents